Package index

All functions

ASOIAF

A pedigree of ice and fire

buildPlotConfig()

build Config

calculateConnections()

Calculate connections for a pedigree dataset

calculateCoordinates()

Calculate coordinates for plotting individuals in a pedigree

computeDistance()

Compute distance between two points

countOffspring()

Count offspring of each individual

countSiblings()

Count siblings of each individual

generateSpouseList()

Generate a spouselist matrix

getDefaultPlotConfig()

Shared Default Plotting Configuration

ggPedigree() ggpedigree()

Plot a custom pedigree diagram

ggPedigreeInteractive() ggpedigreeInteractive() ggpedigreeinteractive()

Interactive pedigree plot (Plotly wrapper around ggPedigree)

ggPhenotypeByDegree()

Plot correlation of genetic relatedness by phenotype

ggRelatednessMatrix() ggrelatednessmatrix()

Plot a relatedness matrix as a heatmap (ggpedigree style)

optimizePedigree()

Optimize Pedigree Plot

optimizePlotlyPedigree()

Optimize Plotly Pedigree Plot

plotPedigree()

plotPedigree A wrapped function to plot simulated pedigree from function simulatePedigree. This function require the installation of package kinship2.

redsquirrels

Kluane Red Squirrel Data