Package index • ggpedigree

All functions

buildPlotConfig(): build Config

calculateConnections(): Calculate connections for a pedigree dataset

calculateCoordinates(): Calculate coordinates for plotting individuals in a pedigree

computeCurvedMidpoint(): Compute midpoint coordinate for curved segment

computeDistance(): Compute distance between two points

countOffspring(): Count offspring of each individual

countSiblings(): Count siblings of each individual

generateSpouseList(): Generate a spouselist matrix

getDefaultPlotConfig(): Shared Default Plotting Configuration

ggPedigree() ggpedigree(): Plot a custom pedigree diagram

ggPedigreeInteractive() ggpedigreeinteractive() ggpedigreeInteractive(): Interactive pedigree plot (Plotly wrapper around ggPedigree)

ggPhenotypeByDegree(): Plot correlation of genetic relatedness by phenotype

ggRelatednessMatrix() ggrelatednessmatrix(): Plot a relatedness matrix as a heatmap (ggpedigree style)

plotPedigree(): plotPedigree A wrapped function to plot simulated pedigree from function simulatePedigree. This function require the installation of package kinship2.

redsquirrels: Kluane Red Squirrel Data