Construct Adjacency Matrix for Parent-Child Relationships Using Indexed Method

Usage

.adjIndexed(
  ped,
  component,
  saveable,
  resume,
  save_path,
  verbose,
  lastComputed,
  checkpoint_files,
  update_rate,
  parList,
  lens,
  save_rate_parlist,
  config,
  compress = config$compress
)

Arguments

ped: a pedigree dataset. Needs ID, momID, and dadID columns
component: character. Which component of the pedigree to return. See Details.
saveable: logical. If TRUE, save the intermediate results to disk
resume: logical. If TRUE, resume from a checkpoint
save_path: character. The path to save the checkpoint files
verbose: logical. If TRUE, print progress through stages of algorithm
lastComputed: the last computed index
checkpoint_files: a list of checkpoint files
update_rate: numeric. The rate at which to print progress
parList: a list of parent-child relationships
lens: a vector of the lengths of the parent-child relationships
save_rate_parlist: numeric. The rate at which to save the intermediate results by parent list. If NULL, defaults to save_rate*1000
config: a configuration list that passes parameters to the function
compress: logical. If TRUE, use compression when saving the checkpoint files. Defaults to TRUE.