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Changelog

Source: NEWS.md

BGmisc 1.4.1

  • replaced print with message in all functions
  • Exposed several internal functions to the user
  • refactored addPhantomParents to be more efficient
  • add mtdna and mitochondria as aliases for mitochondrial
  • reorganized unit tests
  • introduces the new calculateCIs function for computing confidence intervals for correlation coefficients
  • added comprehensive tests and corresponding documentation updates for calculateCI

BGmisc 1.4.0

  • revived checkParents function to check for handling phantom parents and missing parents
  • added tests for checkParents function
  • added GoT analysis
  • reduced complexity of com2links, summarizePedigree, and checkIDs with the use of subfunctions
  • allow verbose argument to be passed to standardizeColnames
  • list SimPed and related_coef as aliases for functions
  • harmonizing function names like calcFamilySize from famSizeCal
  • implemented adjBeta function to evaluation alternative build method
  • reorganize file names to be more consistent
  • harmonized famID

BGmisc 1.3.5.1

  • Setting the default for the sparse argument in ped2com() to TRUE

BGmisc 1.3.5

CRAN release: 2025-04-02

  • Add calculateCIs and readDelimitedData functions
  • Added ASOIAF pedigree
  • Added com2links() function to convert components to kinship links, with accompanying tests
  • Added extractWikiFamilyTree() function to parse family trees from wiki templates, with accompanying tests
  • Created vignette demonstrating adjacency matrix methods and applications
  • Improved plotPedigree() function by silencing unnecessary invisible list outputs
  • Added checkPedigreeNetwork() function for validating pedigree network structure, with accompanying tests

BGmisc 1.3.4.1

  • Hot fix to resolve issue with list of adjacency matrix not loading saved version
  • Reoptimized generation calculation

BGmisc 1.3.4

  • Added alternative (and faster) methods to create the adjacency matrix
  • Add tests for comparison of adjacency matrix build methods
  • Added Royal Family pedigree

BGmisc 1.3.3

CRAN release: 2025-02-19

  • Added ability to save and reload pedigree objects that are used by ped2Com
  • Optimized generation calculation
  • Added more tests for summarizePedigree
  • enhanced documentation

BGmisc 1.3.2.1

  • Added ability to pass additional arguments to the ped2FOO functions

BGmisc 1.3.2

CRAN release: 2024-06-18

  • Added some more tests of identifyModel.R
  • Modified tests to be MKL friendly

BGmisc 1.3.1

CRAN release: 2024-06-16

  • Confirmed that all orcids are correct
  • Added gedcom importer

BGmisc 1.3.0.1

  • Created subfunctions to reduce function complexity

BGmisc 1.3.0

  • Harmonized function names
  • Fixed incorrectly spelled last name in Potter pedigree
  • Added function to summarize variables by family, matrilinael, and patrilineal lines
  • Added within row duplicate ID checks
  • Added data validation vignettes
  • Harmonized function names and arguments

BGmisc 1.2.1

  • Added alternative transpose options for the matrix
  • Added generalization of Falconer’s formula

BGmisc 1.2.0

CRAN release: 2024-02-26

  • Added numerous code checks, increased code coverage to 85%
  • Replaced sapply usage
  • Added additional data validation checks
  • Accompanying paper published in the Journal of Open Source Software

BGmisc 1.1.0

  • Added ability to simulate twins
  • Can now trace paternal and maternal lines
  • There’s now a Harry Potter pedigree

BGmisc 1.0.1

CRAN release: 2023-09-26

  • Hot fix to resolve plotPedigree wrapper function breaking for pedigrees that contained multiple families

BGmisc 1.0

CRAN release: 2023-09-20

  • Added major update to include simulations, plotting, and examples.

BGmisc 0.1

CRAN release: 2020-12-04

  • Added a NEWS.md file to track changes to the package.
  • Initial version launched